Here are the pictures taken by the body shop during the repair process. Sorry, no pics of the rust under my Mazda3 badge on the liftgate. Finding that meant completely refinishing the panel vs. the patch job they were going to do.
I got 3M applied to: inside bottom of all doors (part you step over), up about 1/4 on all doors, perimeter of all wheel wells, and inside rear wheel wells.
Total repair time was 9 days. I have to bring it back next week since they didn't properly remove the foam stuff they put on the non-painted areas to protect them from overspray. The inside of my door jambs are rough/dull because of this so they have to clean and buff the areas. Also, my rear bumper isn't on properly (noticeable gap). Plus, when the removed my side sills, they used a bar or something that caused dents all along the tops. I'll get pictures this weekend. The body shop will try to patch these up so I'm willing to give that a shot to see how it turns out. Right now, with the rest of the car looking spectacular, it looks really awful! Something to watch out for if you're getting the lower trim of your rear doors repaired since they do have to remove the side sills for that job.
Last thing, my lights and cruise haven't been working right since I got the car back! No issues at all beforehand so I can only assume something happened during the job. Despite the light setting (auto, on, off), my lights will flicker on and off. I can't use my cruise when the lights are set to "on". If I'm cruising and play with the light switch (to get the lights to stay off), the cruise is disengaged. Of course when I brought the car to the body shop yesterday, the problem didn't come up during the test drive! Figures. Anyhow, it is doing this consistently now so I'll have them check the wiring next week when I bring the car in for the extra work.